STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab39Ras-related protein Rab-39A. (217 aa)    
Predicted Functional Partners:
Itsn2
Intersectin-2.
    
 0.818
Itsn1
Intersectin-1 isoform X1.
    
 0.744
Ptar1
Protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1.
    
 0.630
MGP_PahariEiJ_P0040170
annotation not available
   
 0.609
Gdi1
Rab GDP dissociation inhibitor alpha isoform X1.
   
 0.609
Chml
Rab proteins geranylgeranyltransferase component A 2.
    
 0.595
Chm
Rab proteins geranylgeranyltransferase component A 1.
    
 0.595
Cog6
Conserved oligomeric Golgi complex subunit 6 isoform X1.
    
 0.591
Rabggtb
Geranylgeranyl transferase type-2 subunit beta.
    
 0.586
Cog8
Conserved oligomeric Golgi complex subunit 8.
    
 0.578
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.