STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rnf111E3 ubiquitin-protein ligase Arkadia isoform X1. (989 aa)    
Predicted Functional Partners:
Smad7
Mothers against decapentaplegic homolog 7 isoform X1.
   
 0.984
Smad3
Mothers against decapentaplegic homolog 3.
   
 0.855
Skil
Ski-like protein isoform X1.
   
 0.795
Axin1
Axin-1 isoform X1.
    
 
 0.782
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.756
Smad6
Mothers against decapentaplegic homolog 6.
   
 0.745
Smad2
Mothers against decapentaplegic homolog 2 isoform X1.
   
 0.742
Axin2
Axin 2.
    
 
 0.702
Smurf2
E3 ubiquitin-protein ligase SMURF2.
    
 0.685
Ski
Ski oncogene isoform X1.
   
 0.673
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.