STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col6a4Collagen alpha-4(VI) chain. (2309 aa)    
Predicted Functional Partners:
Cd44
CD44 antigen isoform X1.
    
 0.906
Gp6
Platelet glycoprotein VI isoform X1.
     
 0.905
Itga9
Integrin alpha-9 isoform X1.
    
 0.748
Itga6
Integrin alpha-6 isoform X1.
    
 0.735
Itga2b
Integrin alpha-IIb.
    
 0.719
Itgb4
Integrin beta-4 isoform X1.
   
 0.717
Itgb6
Integrin beta 6.
    
 0.717
Itga8
Integrin alpha-8 isoform X1.
    
 0.715
Itga7
Integrin alpha-7 isoform X1.
    
 0.715
Itga3
Integrin alpha-3 isoform X1.
   
 0.712
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.