STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dnase1Deoxyribonuclease-1. (284 aa)    
Predicted Functional Partners:
Dnase2a
Deoxyribonuclease-2-alpha.
      
 0.503
Rims2
Regulating synaptic membrane exocytosis 2.
   
 
 0.487
Tnf
Tumor necrosis factor superfamily, member 2.
    
 
 0.464
Ptprc
Receptor-type tyrosine-protein phosphatase C isoform X1.
   
 
 0.438
Chuk
Inhibitor of nuclear factor kappa-B kinase subunit alpha.
   
 0.437
Ikbkb
Inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1.
   
 0.437
Ikbke
Inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1.
   
 0.437
Tbk1
Serine/threonine-protein kinase TBK1.
   
 0.437
Pla2g1b
Secretory phospholipase A2.
   
    0.422
Sin3a
Paired amphipathic helix protein Sin3a isoform X1.
    
 0.421
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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