STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snai2Zinc finger protein SNAI2. (269 aa)    
Predicted Functional Partners:
Kdm1a
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
    
 0.855
Twist1
Twist-related protein 1.
   
  
 0.752
Sin3a
Paired amphipathic helix protein Sin3a isoform X1.
    
 
 0.748
Cdh1
Cadherin 1, type 1, E-cadherin.
      
 0.734
Ctnnb1
Catenin beta-1 isoform X1.
      
 0.732
Trp53
Cellular tumor antigen p53 isoform X1.
    
 0.732
Cdh2
Cadherin 2, type 1, N-cadherin.
      
 0.732
Ctbp1
C-terminal-binding protein 1 isoform X1.
    
 
 0.685
Smad2
Mothers against decapentaplegic homolog 2 isoform X1.
   
 
 0.684
Sox9
Transcription factor SOX9 (SOX group E).
   
 
 0.680
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.