STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rtn4Reticulon-4 isoform X1. (1167 aa)    
Predicted Functional Partners:
Bace1
Beta-site APP-cleaving enzyme 1 (memapsin 2).
   
 0.969
Rtn4r
Reticulon-4 receptor.
    
 0.966
Rtn3
Reticulon-3 isoform X1.
    
0.962
Bace2
Beta-site APP-cleaving enzyme 2 (memapsin 1).
   
 0.929
Lingo1
Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein.
   
 0.902
Omg
Oligodendrocyte myelin glycoprotein.
    
 0.853
Rtn4rl1
Reticulon-4 receptor-like 1.
    
 0.818
Nus1
Dehydrodolichyl diphosphate synthase complex subunit NUS1.
    
 
 0.816
Rtn4rl2
Reticulon-4 receptor-like 2.
    
 0.780
S1pr2
Sphingosine 1-phosphate receptor 2.
    
 
 0.750
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.