STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NgfrTumor necrosis factor receptor superfamily member 16. (427 aa)    
Predicted Functional Partners:
Ntf3
Neurotrophin-3 isoform X1.
    
 0.987
Ngf
Nerve growth factor, beta.
    
 0.987
Arhgdia
Rho GDP-dissociation inhibitor 1.
    
 0.970
Arhgdib
Rho GDP-dissociation inhibitor 2 isoform X1.
    
 0.970
Arhgdig
Rho GDP-dissociation inhibitor 3.
    
 0.970
Bex3
Nerve growth factor receptor-associated protein 1.
    
 0.967
Bdnf
LOW QUALITY PROTEIN: brain-derived neurotrophic factor.
    
 0.956
Ntf5
Neurotrophin 4.
     
 0.954
Traf6
TNF receptor-associated factor 6.
    
 0.938
Irak4
Interleukin-1 receptor-associated kinase 4 isoform X1.
    
 0.928
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.