STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lima1LIM domain and actin-binding protein 1 isoform X1. (761 aa)    
Predicted Functional Partners:
Ctnnb1
Catenin beta-1 isoform X1.
      
 0.737
Cdh1
Cadherin 1, type 1, E-cadherin.
   
 
 0.633
Vcl
Vinculin.
   
 
 0.613
Birc3
Baculoviral IAP repeat-containing protein 2/3.
    
 
 0.608
Ctnna1
Catenin alpha-1 isoform X1.
   
 
 0.598
Ctnnd1
Catenin delta 1.
   
  
 0.534
Ctnnd1-2
Catenin (cadherin-associated protein), delta 1.
   
  
 0.534
Flnb
Filamin-B isoform X1.
   
 
 0.505
Tjp1
Tight junction protein ZO-1 isoform X1.
      
 0.504
Flna
Filamin-A isoform X1.
   
 
 0.499
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.