STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pou5f1POU domain, class 5, transcription factor 1 isoform X1. (353 aa)    
Predicted Functional Partners:
Sox2
Transcription factor SOX2 (SOX group B).
    
 0.999
MGP_PahariEiJ_P0076004
annotation not available
   
 0.996
Sall4
Sal-like protein 4 isoform X1.
   
 0.962
Wdr5
WD repeat-containing protein 5.
    
 
 0.939
Ctnnb1
Catenin beta-1 isoform X1.
    
 0.912
Hdac1
Histone deacetylase 1/2.
   
 0.874
Sox1
Transcription factor SOX1/3/14/21 (SOX group B).
    
 0.872
Esrrb
Steroid hormone receptor ERR2 isoform X1.
   
 0.868
Sox17
Transcription factor SOX17 (SOX group F).
    
 0.860
Kdm1a
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
    
 
 0.844
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.