STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trim39Tripartite motif-containing protein 39. (496 aa)    
Predicted Functional Partners:
Pou5f1
POU domain, class 5, transcription factor 1 isoform X1.
    
 0.686
Tlr11
Toll-like receptor 11.
    
 0.677
Tlr8
Toll-like receptor 8 isoform X1.
   
 0.671
Btnl2
Butyrophilin-like protein 2.
 
    
 0.660
Tlr5
Toll-like receptor 5.
    
 0.657
Ago3
Eukaryotic translation initiation factor 2C.
    
 0.612
Ago2
Eukaryotic translation initiation factor 2C.
    
 0.611
Ago4
Eukaryotic translation initiation factor 2C.
    
 0.611
Cactin
Cactin isoform X1.
    
 
 0.609
Ago1
Eukaryotic translation initiation factor 2C.
    
 0.607
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.