STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kdm4bLysine demethylase 4B. (1024 aa)    
Predicted Functional Partners:
Esr1
Estrogen receptor isoform X1.
    
 0.768
Kdm3a
[histone H3]-dimethyl-L-lysine9 demethylase.
     
 0.724
Kdm1a
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
   
 0.707
Smarca4
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4.
    
 
 0.671
Kdm2b
F-box and leucine-rich repeat protein 10/11.
    
 
 0.651
Kdm6b
Lysine-specific demethylase 6B.
   
 0.636
Trp53bp1
Tumor suppressor p53-binding protein 1.
     
 0.613
Kdm3b
[histone H3]-dimethyl-L-lysine9 demethylase.
     
 0.573
Kdm6a
Lysine-specific demethylase 6A isoform X1.
   
 0.566
Kdm4a
[histone H3]-trimethyl-L-lysine9/36 demethylase.
  
 
 
0.563
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.