Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ddx6 | Lsm1 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0046969 | Probable ATP-dependent RNA helicase DDX6. | U6 snRNA-associated Sm-like protein LSm1. | 0.990 |
Ddx6 | Lsm2 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0043909 | Probable ATP-dependent RNA helicase DDX6. | U6 snRNA-associated Sm-like protein LSm2 isoform X1. | 0.848 |
Ddx6 | Lsm3 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0051231 | Probable ATP-dependent RNA helicase DDX6. | U6 snRNA-associated Sm-like protein LSm3. | 0.735 |
Ddx6 | Lsm4 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0047695 | Probable ATP-dependent RNA helicase DDX6. | U6 snRNA-associated Sm-like protein LSm4. | 0.898 |
Ddx6 | Lsm5 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0050094 | Probable ATP-dependent RNA helicase DDX6. | U6 snRNA-associated Sm-like protein LSm5. | 0.654 |
Ddx6 | Lsm6 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0053382 | Probable ATP-dependent RNA helicase DDX6. | U6 snRNA-associated Sm-like protein LSm6. | 0.715 |
Ddx6 | Lsm7 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0087175 | Probable ATP-dependent RNA helicase DDX6. | U6 snRNA-associated Sm-like protein LSm7. | 0.988 |
Ddx6 | Patl1 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0021237 | Probable ATP-dependent RNA helicase DDX6. | DNA topoisomerase 2-associated protein PAT1. | 0.982 |
Ddx6 | Patl2 | MGP_PahariEiJ_P0023212 | MGP_PahariEiJ_P0065207 | Probable ATP-dependent RNA helicase DDX6. | Protein PAT1 homolog 2 isoform X1. | 0.905 |
Lsm1 | Ddx6 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0023212 | U6 snRNA-associated Sm-like protein LSm1. | Probable ATP-dependent RNA helicase DDX6. | 0.990 |
Lsm1 | Lsm2 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0043909 | U6 snRNA-associated Sm-like protein LSm1. | U6 snRNA-associated Sm-like protein LSm2 isoform X1. | 0.996 |
Lsm1 | Lsm3 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0051231 | U6 snRNA-associated Sm-like protein LSm1. | U6 snRNA-associated Sm-like protein LSm3. | 0.987 |
Lsm1 | Lsm4 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0047695 | U6 snRNA-associated Sm-like protein LSm1. | U6 snRNA-associated Sm-like protein LSm4. | 0.998 |
Lsm1 | Lsm5 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0050094 | U6 snRNA-associated Sm-like protein LSm1. | U6 snRNA-associated Sm-like protein LSm5. | 0.997 |
Lsm1 | Lsm6 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0053382 | U6 snRNA-associated Sm-like protein LSm1. | U6 snRNA-associated Sm-like protein LSm6. | 0.997 |
Lsm1 | Lsm7 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0087175 | U6 snRNA-associated Sm-like protein LSm1. | U6 snRNA-associated Sm-like protein LSm7. | 0.998 |
Lsm1 | Lsm8 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0048868 | U6 snRNA-associated Sm-like protein LSm1. | LSM8 homolog, U6 small nuclear RNA associated. | 0.961 |
Lsm1 | Patl1 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0021237 | U6 snRNA-associated Sm-like protein LSm1. | DNA topoisomerase 2-associated protein PAT1. | 0.996 |
Lsm1 | Patl2 | MGP_PahariEiJ_P0046969 | MGP_PahariEiJ_P0065207 | U6 snRNA-associated Sm-like protein LSm1. | Protein PAT1 homolog 2 isoform X1. | 0.970 |
Lsm2 | Ddx6 | MGP_PahariEiJ_P0043909 | MGP_PahariEiJ_P0023212 | U6 snRNA-associated Sm-like protein LSm2 isoform X1. | Probable ATP-dependent RNA helicase DDX6. | 0.848 |
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