STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ubxn8UBX domain-containing protein 8. (282 aa)    
Predicted Functional Partners:
Ubxn1
UBX domain-containing protein 1/4.
   
 0.984
Ubxn7
UBX domain-containing protein 7 isoform X1.
    
 0.975
Vcp
Transitional endoplasmic reticulum ATPase.
   
 0.974
Ubxn6
UBX domain-containing protein 6.
    
 0.968
Ubxn2a
UBX domain-containing protein 2A.
    
 0.968
Nsfl1c
UBX domain-containing protein 1.
    
 0.946
Ubxn4
UBX domain-containing protein 1/4.
   
 
 0.940
Svip
Small VCP/p97-interacting protein.
     
 0.911
Ubac2
Ubiquitin-associated domain-containing protein 2.
    
 0.875
Ufd1
Ubiquitin recognition factor in ER-associated degradation protein 1.
    
 0.874
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.