STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppm1kProtein phosphatase 1K, mitochondrial. (372 aa)    
Predicted Functional Partners:
Bckdha
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial.
   
 0.871
Bckdhb
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial.
    
 0.839
Dbt
2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase).
    
 0.781
Bckdk
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial.
   
 0.692
Aanat
Arylalkylamine N-acetyltransferase.
    
   0.644
Bcat2
Branched-chain-amino-acid aminotransferase, mitochondrial isoform X1.
    
 
 0.557
Dld
Dihydrolipoyl dehydrogenase, mitochondrial isoform X1.
   
 0.540
Med31
Mediator of RNA polymerase II transcription subunit 31.
    
  0.506
Med7
Mediator of RNA polymerase II transcription subunit 7.
    
  0.492
Med21
Mediator of RNA polymerase II transcription subunit 21.
    
  0.492
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.