STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Loxl3Lysyl oxidase-like protein 2/3/4. (754 aa)    
Predicted Functional Partners:
Snai1
Zinc finger protein SNAI1.
    
 
 0.761
Gata6
Transcription factor GATA-6.
    
 0.698
Eln
Elastin.
    
 0.695
Col11a1
Collagen alpha-1(XI) chain isoform X1.
   
 0.513
Fbln5
Fibulin-5 isoform X1.
     
 0.489
Loxl4
Lysyl oxidase homolog 4 isoform X1.
  
 
 
0.488
Bmp1
Bone morphogenetic protein 1 isoform X1.
    
 0.487
Plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
   
 0.469
Lox
Protein-lysine 6-oxidase isoform X1.
   
 
0.455
Plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.442
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.