STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AmfrE3 ubiquitin-protein ligase AMFR isoform X1. (631 aa)    
Predicted Functional Partners:
Ube2g2
Ubiquitin-conjugating enzyme E2 G2.
    
 0.987
Vcp
Transitional endoplasmic reticulum ATPase.
    
 0.981
Derl1
Derlin-1 isoform X1.
    
 0.970
Ngly1
Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase isoform X1.
   
 0.957
Sel1l
Protein sel-1 homolog 1 isoform X1.
   
 0.955
Rad23b
UV excision repair protein RAD23 homolog B.
    
 0.943
Ubxn1
UBX domain-containing protein 1/4.
    
 0.927
Derl2
Derlin-2 isoform X1.
   
 0.924
Insig1
Insulin-induced gene 1 protein.
    
 
 0.921
MGP_PahariEiJ_P0041026
LOW QUALITY PROTEIN: FAS-associated factor 2-like.
    
 0.905
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.