STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pabpn1lPABPN1 like, cytoplasmic. (273 aa)    
Predicted Functional Partners:
Rbm22
Pre-mRNA-splicing factor RBM22/SLT11.
   
 0.595
Srsf2
Splicing factor, arginine/serine-rich 2.
  
 
 0.580
MGP_PahariEiJ_P0020720
annotation not available
   
 0.578
MGP_PahariEiJ_P0020721
annotation not available
   
 0.578
Btg4
Protein Tob/BTG.
    
 
 0.574
Tia1
Nucleolysin TIA-1 isoform X1.
  
 
 0.573
Leo1
RNA polymerase-associated protein LEO1 isoform X1.
   
 0.559
Tra2a
Transformer-2 protein homolog alpha isoform X1.
  
   
 0.543
Pabpc1l
Polyadenylate-binding protein 1-like.
  
 0.530
Pum1
Pumilio homolog 1 isoform X1.
    
 0.527
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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