STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx54ATP-dependent RNA helicase DDX54/DBP10. (875 aa)    
Predicted Functional Partners:
Pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.977
Ftsj3
AdoMet-dependent rRNA methyltransferase SPB1.
   
 0.973
Noc2l
LOW QUALITY PROTEIN: nucleolar complex protein 2 homolog.
   
 0.965
Nop2
Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase.
   
 0.960
Nsun6
Putative methyltransferase NSUN6.
   
 0.960
Pum3
Pumilio homology domain family member 6.
   
 0.945
Bop1
Ribosome biogenesis protein BOP1.
   
 0.944
Cep152
Centrosomal protein of 152 kDa isoform X1.
   
 0.944
Ddx18
ATP-dependent RNA helicase DDX18/HAS1.
  
0.943
Ppan
Ribosome biogenesis protein SSF1/2.
   
  0.941
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.