STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam163bProtein FAM163B. (167 aa)    
Predicted Functional Partners:
Zc2hc1b
LOW QUALITY PROTEIN: zinc finger C2HC domain-containing protein 1B.
      
 0.732
Zdhhc22
Palmitoyltransferase ZDHHC22.
   
  
 0.623
Sec22c
SEC22 vesicle trafficking protein A/C.
      
 0.622
Cacfd1
Calcium channel flower homolog isoform X1.
      
 0.503
Lrrtm2
Leucine-rich repeat transmembrane neuronal protein 2 isoform X1.
      
 0.470
Thnsl2
O-phospho-L-threonine phospho-lyase.
      
 0.420
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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