STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrp1bLow-density lipoprotein receptor-related protein 1B. (4599 aa)    
Predicted Functional Partners:
Agrn
Agrin isoform X1.
    
 0.673
Dkk1
Dickkopf-related protein 1.
    
 0.648
Ldlrap1
Low density lipoprotein receptor adapter protein 1.
    
 0.610
Reln
Reelin isoform X1.
    
 0.601
Csmd3
CUB and sushi domain-containing protein 3 isoform X1.
   
 
 0.600
Pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.589
App
Amyloid beta precursor protein.
   
 0.588
Itsn2
Intersectin-2.
    
 0.583
Hpx
Hemopexin.
    
 0.580
Apoe
Apolipoprotein E.
    
 0.578
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.