STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ubr3E3 ubiquitin-protein ligase UBR3. (242 aa)    
Predicted Functional Partners:
Hectd1
E3 ubiquitin-protein ligase HECTD1.
   
  
 0.614
Ubr7
Putative E3 ubiquitin-protein ligase UBR7.
      
 0.561
Cul5
Cullin-5 isoform X1.
   
    0.537
Ubr4
E3 ubiquitin-protein ligase UBR4.
     
 0.521
Trip12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.448
Ate1
Arginyl-tRNA--protein transferase 1 isoform X1.
   
  
 0.445
Kbtbd12
Kelch repeat and BTB domain-containing protein 12.
   
 
 0.432
Ube3c
Ubiquitin-protein ligase E3 C.
   
  
 0.417
Arhgap4
Rho GTPase-activating protein 4 isoform X1.
      
 0.416
Ubr5
E3 ubiquitin-protein ligase UBR5 isoform X1.
   
  
 0.412
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.