STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ube2l6Ubiquitin conjugating enzyme E2 L6. (93 aa)    
Predicted Functional Partners:
Uba7
Ubiquitin-like modifier-activating enzyme 7.
   
 0.977
Isg15
Ubiquitin cross-reactive protein.
   
 0.977
Trim25
E3 ubiquitin/ISG15 ligase TRIM25 isoform X1.
   
 0.969
Arih1
E3 ubiquitin-protein ligase ARIH1.
   
 0.937
Prkn
E3 ubiquitin-protein ligase parkin isoform X1.
    
 0.910
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
   
 0.840
Uba52
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.829
Herc6
Probable E3 ubiquitin-protein ligase HERC6.
   
 0.827
Nedd8
Ubiquitin-like protein Nedd8.
   
 0.788
Rnf217
Probable E3 ubiquitin-protein ligase RNF217.
   
 0.770
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.