STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MGP_PahariEiJ_P0065166annotation not available (671 aa)    
Predicted Functional Partners:
Zmat2
U4/U6.U5 tri-snRNP component SNU23.
   
 0.923
Prpf38a
Pre-mRNA-splicing factor 38A.
   
 0.917
Sart1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.914
Smu1
WD40 repeat-containing protein SMU1.
   
 0.899
Prpf31
U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1.
   
 0.898
Snrnp200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.886
Prpf6
Pre-mRNA-processing factor 6.
   
 0.886
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 0.882
Sf3a1
Splicing factor 3A subunit 1.
   
 0.879
Sf3a3
Splicing factor 3A subunit 3.
   
 0.879
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.