STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PogzPogo transposable element with ZNF domain isoform X1. (1409 aa)    
Predicted Functional Partners:
Psip1
PC4 and SFRS1-interacting protein isoform X1.
    
 
 0.823
Kctd2
BTB/POZ domain-containing protein KCTD2/5/17.
    
  0.733
Cbx5
Chromobox protein homolog 5.
   
 0.733
Ube2i
Ubiquitin-conjugating enzyme E2 I.
    
  0.733
Chd8
Chromodomain helicase DNA binding protein 8.
   
 0.721
Cbx3
Chromobox protein homolog 3.
   
 0.698
Gtf3c5
General transcription factor 3C polypeptide 5 (transcription factor C subunit 1).
   
 0.644
MGP_PahariEiJ_P0067339
annotation not available
   
 
 0.617
Champ1
Chromosome alignment-maintaining phosphoprotein 1.
   
 0.588
Brf1
Transcription factor IIIB 90 kDa subunit isoform X1.
   
 
 0.553
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.