STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpf1Ribosome production factor 1. (273 aa)    
Predicted Functional Partners:
Mak16
Protein MAK16 homolog.
   
 0.997
Nifk
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 0.997
Wdr74
WD repeat-containing protein 74 isoform X1.
   
 0.996
Brix1
Ribosome biogenesis protein BRX1 homolog.
   
 0.996
Ebna1bp2
Probable rRNA-processing protein EBP2.
   
 0.992
Rsl1d1
Ribosomal L1 domain-containing protein 1.
   
 0.991
Ddx18
ATP-dependent RNA helicase DDX18/HAS1.
   
 0.990
Pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.987
Rpf2
Ribosome production factor 2 homolog.
   
 0.986
Nip7
60S ribosome subunit biogenesis protein NIP7 homolog isoform X1.
   
 0.985
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.