STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpe65Retinoid isomerohydrolase / lutein isomerase. (533 aa)    
Predicted Functional Partners:
Lrat
Phosphatidylcholine-retinol O-acyltransferase.
     
 0.971
Rdh5
11-cis retinol dehydrogenase.
   
 
 0.971
Rdh11
Retinol dehydrogenase 11 isoform X1.
   
 
 0.953
Rdh10
Retinol dehydrogenase 10.
   
 
 0.948
Dgat1
Diacylglycerol O-acyltransferase 1.
   
 
 0.915
Awat2
Acyl-CoA wax alcohol acyltransferase 2 isoform X1.
   
 
 0.902
Rlbp1
Retinaldehyde-binding protein 1.
   
  
 0.746
Rho
Rhodopsin.
   
  
 0.740
Best1
Bestrophin-1.
      
 0.732
Abca4
ATP-binding cassette, subfamily A (ABC1), member 4.
   
  
 0.670
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.