STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Yod1Ubiquitin thioesterase OTU1. (343 aa)    
Predicted Functional Partners:
Vcp
Transitional endoplasmic reticulum ATPase.
   
 0.989
Plaa
Phospholipase A-2-activating protein isoform X1.
    
 
 0.977
Ufd1
Ubiquitin recognition factor in ER-associated degradation protein 1.
   
 
 0.956
Nsfl1c
UBX domain-containing protein 1.
   
 
 0.952
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
   
 
 0.910
Spata5
Spermatogenesis-associated protein 5 isoform X1.
   
 0.896
Ube4b
Ubiquitination factor E4B.
    
 
 0.820
Ubxn6
UBX domain-containing protein 6.
    
 
 0.810
Ube4a
Ubiquitin conjugation factor E4 A.
    
 
 0.803
Faap100
Fanconi anemia core complex-associated protein 100.
    
 
 0.787
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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