STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sox13Transcription factor SOX5/6/13 (SOX group D). (613 aa)    
Predicted Functional Partners:
Tcf7
Transcription factor 7 isoform X1.
     
0.658
Cep85
Centrosomal protein of 85 kDa isoform X1.
    
 
 0.656
Sox5
Transcription factor SOX5/6/13 (SOX group D).
    
 
0.550
Ctnnb1
Catenin beta-1 isoform X1.
   
 0.512
5830411N06Rik
Scavenger receptor cysteine-rich domain-containing protein SCART1-like.
   
  
 0.504
Skint1
Selection and upkeep of intraepithelial T-cells protein 1.
      
 0.503
Lef1
Lymphoid enhancer-binding factor 1 isoform X1.
     
0.492
Trip12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
    
 
 0.488
Jup
Junction plakoglobin.
   
 0.479
Qsox1
Sulfhydryl oxidase 1 isoform X1.
      
 0.441
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.