STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lhx4LIM/homeobox protein Lhx4. (390 aa)    
Predicted Functional Partners:
Isl1
Insulin gene enhancer protein ISL-1 isoform X1.
   
0.927
Isl2
Insulin gene enhancer protein ISL-2.
   
0.797
Ldb1
LIM domain-binding protein 1 isoform X1.
    
 0.731
Alx3
Homeobox protein aristaless-like 3.
   
0.693
Pou1f1
POU class 1 homeobox 1.
   
 
 0.681
Ldb2
LIM domain-binding protein 2 isoform X1.
    
 0.616
Prop1
Homeobox protein prophet of Pit-1.
   
0.614
Ssbp2
Single-stranded DNA-binding protein 2 isoform X1.
    
 
 0.548
Esx1
Homeobox protein ESX1.
   
 0.495
Sox3
Transcription factor SOX1/3/14/21 (SOX group B).
   
 
 0.482
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.