STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3f3aH3.3 histone A. (115 aa)    
Predicted Functional Partners:
Kdm6b
Lysine-specific demethylase 6B.
   
 0.828
Kdm6a
Lysine-specific demethylase 6A isoform X1.
   
 0.828
Cbx5
Chromobox protein homolog 5.
   
 0.780
Cenpa
Histone H3-like centromeric protein A.
  
 
0.761
Atrx
Transcriptional regulator ATRX.
    
 0.723
Dnmt3a
DNA (cytosine-5)-methyltransferase 3A isoform X1.
   
 0.705
Kdm4a
[histone H3]-trimethyl-L-lysine9/36 demethylase.
    
 0.696
Arid4b
AT-rich interactive domain-containing protein 4B isoform X1.
   
 0.694
Arid4a
AT-rich interactive domain-containing protein 4A.
   
 0.694
Carm1
Coactivator associated arginine methyltransferase 1.
   
 0.692
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.