STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MGP_PahariEiJ_P0076886annotation not available (286 aa)    
Predicted Functional Partners:
Nodal
Nodal homolog.
  
 
 0.862
Cer1
Cerberus 1.
   
 0.675
Acvr1b
Activin receptor type-1B isoform X1.
    
 0.667
Tgfbr1
TGF-beta receptor type-1 isoform X1.
    
 0.643
Acvr1
Activin receptor type-1 isoform X1.
    
 0.639
Pou5f1
POU domain, class 5, transcription factor 1 isoform X1.
   
 
 0.619
Acvr2b
Activin receptor type-2B isoform X1.
   
 0.615
Pitx2
Paired-like homeodomain transcription factor 2.
   
  
 0.605
MGP_PahariEiJ_P0076004
annotation not available
   
 
 0.587
Smad2
Mothers against decapentaplegic homolog 2 isoform X1.
    
 0.580
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.