STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx1ATP-dependent RNA helicase DDX1. (740 aa)    
Predicted Functional Partners:
Rtcb
TRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase).
   
 0.985
Fam98a
Protein FAM98A isoform X1.
   
 0.965
Rtraf
UPF0568 protein C14orf166 homolog.
   
 0.964
Fam98b
Protein FAM98B.
   
 0.955
AI597479
Ashwin isoform X1.
    
 0.925
Dhx36
ATP-dependent RNA helicase DHX36 isoform X1.
   
 0.917
Zbtb8os
Protein archease isoform X1.
     
 0.854
Cops3
COP9 signalosome complex subunit 3 isoform X1.
   
 
 0.809
Psmc1
26S protease regulatory subunit 4 isoform X1.
   
 
 0.803
Psmc5
26S proteasome regulatory subunit T6.
   
 
 0.798
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.