STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prpf39Pre-mRNA-processing factor 39 isoform X1. (665 aa)    
Predicted Functional Partners:
Trnau1ap
TRNA selenocysteine 1-associated protein 1.
   
 0.937
Rbm25
RNA-binding protein 25 isoform X1.
   
 0.937
Snrpa1
U2 small nuclear ribonucleoprotein A.
    
 0.926
Snrpn
Small nuclear ribonucleoprotein-associated protein N.
    
 0.922
Cdc5l
Cell division cycle 5-like protein.
   
 
 0.914
Prpf40b
Pre-mRNA-processing factor 40 homolog B isoform X1.
    
 0.908
Snrpd1
Small nuclear ribonucleoprotein Sm D1 isoform X1.
    
 0.906
Snrnp70
U1 small nuclear ribonucleoprotein 70 kDa isoform X1.
   
 0.905
Snrpf
Small nuclear ribonucleoprotein F.
   
 0.903
Snrnp35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 0.898
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.