STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccnb1ip1E3 ubiquitin-protein ligase CCNB1IP1. (276 aa)    
Predicted Functional Partners:
Ccdc155
Protein KASH5.
    
 
 0.470
H13
Minor histocompatibility antigen H13 isoform X1.
      
 0.422
Sf3a3
Splicing factor 3A subunit 3.
      
 0.418
Osgep
Probable tRNA N6-adenosine threonylcarbamoyltransferase.
      
 0.408
Tspan13
Tetraspanin-13/31.
      
 0.400
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.