STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfpl4bLOW QUALITY PROTEIN: ret finger protein-like 4B. (264 aa)    
Predicted Functional Partners:
Rfpl4
Ret finger protein-like 4A.
    
  
0.519
Tubgcp5
Gamma-tubulin complex component 5.
      
 0.461
Sfmbt1
Scm-like with four MBT domains protein 1.
     
 0.437
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.429
Smc2
Structural maintenance of chromosomes protein 2.
    
 
 0.414
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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