STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sh3rf3SH3 domain-containing RING finger protein 3 isoform X1. (878 aa)    
Predicted Functional Partners:
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.758
Gak
Cyclin-G-associated kinase isoform X1.
   
 0.671
Uxs1
UDP-glucuronic acid decarboxylase 1 isoform X1.
   
  
 0.634
Sptlc1
Serine palmitoyltransferase 1.
    
 
 0.626
Vta1
Vacuolar protein sorting-associated protein VTA1 homolog isoform X1.
    
   0.590
MGP_PahariEiJ_P0036171
annotation not available
    
  0.567
Uba52
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.567
Kxd1
KxDL motif-containing protein 1.
    
  0.567
Clhc1
Clathrin heavy chain linker domain-containing protein 1 isoform X1.
    
  0.564
Cltc
Clathrin heavy chain 1 isoform X1.
    
  0.564
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.