STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NclnNicalin isoform X1. (563 aa)    
Predicted Functional Partners:
Tmem147
Transmembrane protein 147 isoform X1.
    
 
 0.839
Ccdc47
Coiled-coil domain-containing protein 47 isoform X1.
    
 
 0.821
Sec61a2
Protein transport protein Sec61 subunit alpha isoform X1.
   
 
 0.801
Tmco1
Calcium load-activated calcium channel.
   
 
 0.793
Sdr39u1
Epimerase family protein SDR39U1.
      
 0.721
Rpl4
Large subunit ribosomal protein L4e.
    
   0.693
Rpl19
Ribosomal protein L19.
    
   0.693
Sec61a1
Protein transport protein SEC61 subunit alpha.
   
 
 0.689
Nomo1
Nodal modulator 1.
    
 
 0.678
Sec61b
Protein transport protein SEC61 subunit beta.
    
   0.669
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.