Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Furin | Mmp19 | MGP_PahariEiJ_P0017236 | MGP_PahariEiJ_P0087475 | Furin. | Matrix metalloproteinase-19 (RASI). | 0.422 |
Furin | Timp1 | MGP_PahariEiJ_P0017236 | MGP_PahariEiJ_P0088775 | Furin. | Metalloproteinase inhibitor 1 isoform X1. | 0.518 |
MGP_PahariEiJ_P0040289 | Mmp19 | MGP_PahariEiJ_P0040289 | MGP_PahariEiJ_P0087475 | annotation not available | Matrix metalloproteinase-19 (RASI). | 0.539 |
MGP_PahariEiJ_P0040289 | Nid2 | MGP_PahariEiJ_P0040289 | MGP_PahariEiJ_P0083812 | annotation not available | Nidogen (entactin). | 0.570 |
Mmp19 | Furin | MGP_PahariEiJ_P0087475 | MGP_PahariEiJ_P0017236 | Matrix metalloproteinase-19 (RASI). | Furin. | 0.422 |
Mmp19 | MGP_PahariEiJ_P0040289 | MGP_PahariEiJ_P0087475 | MGP_PahariEiJ_P0040289 | Matrix metalloproteinase-19 (RASI). | annotation not available | 0.539 |
Mmp19 | Nid1 | MGP_PahariEiJ_P0087475 | MGP_PahariEiJ_P0040288 | Matrix metalloproteinase-19 (RASI). | Nidogen (entactin). | 0.539 |
Mmp19 | Nid2 | MGP_PahariEiJ_P0087475 | MGP_PahariEiJ_P0083812 | Matrix metalloproteinase-19 (RASI). | Nidogen (entactin). | 0.432 |
Mmp19 | Timp1 | MGP_PahariEiJ_P0087475 | MGP_PahariEiJ_P0088775 | Matrix metalloproteinase-19 (RASI). | Metalloproteinase inhibitor 1 isoform X1. | 0.521 |
Mmp19 | Timp2 | MGP_PahariEiJ_P0087475 | MGP_PahariEiJ_P0038050 | Matrix metalloproteinase-19 (RASI). | Metalloproteinase inhibitor 2. | 0.671 |
Mmp19 | Timp3 | MGP_PahariEiJ_P0087475 | MGP_PahariEiJ_P0088310 | Matrix metalloproteinase-19 (RASI). | Metalloproteinase inhibitor 3. | 0.586 |
Nid1 | Mmp19 | MGP_PahariEiJ_P0040288 | MGP_PahariEiJ_P0087475 | Nidogen (entactin). | Matrix metalloproteinase-19 (RASI). | 0.539 |
Nid1 | Nid2 | MGP_PahariEiJ_P0040288 | MGP_PahariEiJ_P0083812 | Nidogen (entactin). | Nidogen (entactin). | 0.570 |
Nid2 | MGP_PahariEiJ_P0040289 | MGP_PahariEiJ_P0083812 | MGP_PahariEiJ_P0040289 | Nidogen (entactin). | annotation not available | 0.570 |
Nid2 | Mmp19 | MGP_PahariEiJ_P0083812 | MGP_PahariEiJ_P0087475 | Nidogen (entactin). | Matrix metalloproteinase-19 (RASI). | 0.432 |
Nid2 | Nid1 | MGP_PahariEiJ_P0083812 | MGP_PahariEiJ_P0040288 | Nidogen (entactin). | Nidogen (entactin). | 0.570 |
Timp1 | Furin | MGP_PahariEiJ_P0088775 | MGP_PahariEiJ_P0017236 | Metalloproteinase inhibitor 1 isoform X1. | Furin. | 0.518 |
Timp1 | Mmp19 | MGP_PahariEiJ_P0088775 | MGP_PahariEiJ_P0087475 | Metalloproteinase inhibitor 1 isoform X1. | Matrix metalloproteinase-19 (RASI). | 0.521 |
Timp1 | Timp2 | MGP_PahariEiJ_P0088775 | MGP_PahariEiJ_P0038050 | Metalloproteinase inhibitor 1 isoform X1. | Metalloproteinase inhibitor 2. | 0.588 |
Timp1 | Timp3 | MGP_PahariEiJ_P0088775 | MGP_PahariEiJ_P0088310 | Metalloproteinase inhibitor 1 isoform X1. | Metalloproteinase inhibitor 3. | 0.539 |
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