STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmbim4Protein lifeguard 4. (238 aa)    
Predicted Functional Partners:
Gp2
Pancreatic secretory granule membrane major glycoprotein GP2 isoform X1.
      
 0.649
Ddx58
Probable ATP-dependent RNA helicase DDX58.
      
 0.592
Gtpbp1
GTP-binding protein 1.
      
 0.572
Ifih1
Interferon-induced helicase C domain-containing protein 1 isoform X1.
      
 0.556
Cystm1
Cysteine-rich and transmembrane domain-containing protein 1.
      
 0.512
Mrpl30
39S ribosomal protein L30, mitochondrial.
      
 0.504
MGP_PahariEiJ_P0071695
annotation not available
      
 0.497
Nedd4
NEDD4 E3 ubiquitin protein ligase.
    
 
 0.484
Nckap5l
Nck-associated protein 5-like.
      
 0.472
Tsg101
Tumor susceptibility gene 101 protein isoform X1.
      
 0.449
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.