STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Otud5OTU domain-containing protein 5 isoform X1. (571 aa)    
Predicted Functional Partners:
Traf3
TNF receptor-associated factor 3 isoform X1.
    
 0.972
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.822
Sart1
U4/U6.U5 tri-snRNP-associated protein 1.
   
    0.804
Uba52
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.770
Ubr5
E3 ubiquitin-protein ligase UBR5 isoform X1.
   
 
 0.712
MGP_PahariEiJ_P0036171
annotation not available
    
  0.637
Kxd1
KxDL motif-containing protein 1.
    
  0.637
Otud7b
OTU domain-containing protein 7B.
    
 
 0.583
Tbk1
Serine/threonine-protein kinase TBK1.
   
 0.580
Otub1
Ubiquitin thioesterase protein OTUB1.
      
 0.574
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.