STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab33aRas-related protein Rab-33A. (237 aa)    
Predicted Functional Partners:
Rab33b
Ras-related protein Rab-33B.
  
 
 
0.858
Tbc1d25
TBC1 domain family member 25 isoform X1.
     
 0.855
Atg16l1
Autophagy-related protein 16-1 isoform X1.
    
 
 0.775
Trappc1
Trafficking protein particle complex 1.
    
 0.751
Trappc4
Trafficking protein particle complex subunit 4 isoform X1.
    
 0.742
Trappc8
Trafficking protein particle complex subunit 8 isoform X1.
    
 0.734
Ric1
RAB6A-GEF complex partner protein 1 isoform X1.
    
 0.703
Uso1
General vesicular transport factor p115 isoform X1.
   
 0.656
Rabggtb
Geranylgeranyl transferase type-2 subunit beta.
    
 0.650
Lyrm4
LYR motif-containing protein 4.
    
 0.648
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.