STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ubqln2Ubiquilin 2. (638 aa)    
Predicted Functional Partners:
Desi1
Desumoylating isopeptidase 1.
    
 
 0.917
Ube4b
Ubiquitination factor E4B.
   
 0.836
Nbr1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.834
Mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.828
Uba52
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.827
MGP_PahariEiJ_P0070035
annotation not available
   
 0.819
Vcp
Transitional endoplasmic reticulum ATPase.
   
 0.813
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.802
Tardbp
TAR DNA-binding protein 43 isoform X1.
   
 0.800
Traf7
E3 ubiquitin-protein ligase TRAF7 isoform X1.
    
 0.795
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.