STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO_05008Hypothetical protein; COG1055 Na+/H+ antiporter NhaD and related arsenite permeases. (484 aa)    
Predicted Functional Partners:
ALO_05003
COG1655 Uncharacterized protein conserved in bacteria.
       0.531
ALO_05013
COG1414 Transcriptional regulator.
       0.449
ALO_05018
2-deoxy-d-gluconate 3-dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.427
ALO_19552
ABC transporter domain protein; COG4178 ABC-type uncharacterized transport system, permease and ATPase components.
  
     0.404
Your Current Organism:
Acetonema longum
NCBI taxonomy Id: 1009370
Other names: A. longum DSM 6540, Acetonema longum APO-1, Acetonema longum DSM 6540, Acetonema longum str. DSM 6540, Acetonema longum strain DSM 6540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.