STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO_09189Hypothetical protein. (532 aa)    
Predicted Functional Partners:
ALO_04663
COG4672 Phage-related protein.
  
    0.822
ALO_09184
Hypothetical protein.
       0.787
ALO_09179
Hypothetical protein.
       0.780
ALO_09204
Hypothetical protein.
 
     0.757
ALO_01814
Hypothetical protein.
 
     0.694
ALO_09159
Hypothetical protein.
 
     0.692
ALO_01864
Phage gene transfer protein.
 
     0.641
ALO_07398
Mov34/mpn/pad-1 family protein; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily.
  
  
 0.597
ALO_20257
Tail fiber protein, truncation.
 
    0.587
ALO_20262
Tail fiber protein, truncation.
 
    0.583
Your Current Organism:
Acetonema longum
NCBI taxonomy Id: 1009370
Other names: A. longum DSM 6540, Acetonema longum APO-1, Acetonema longum DSM 6540, Acetonema longum str. DSM 6540, Acetonema longum strain DSM 6540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.