Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Becn1 | Dedd | MGP_SPRETEiJ_P0031456 | MGP_SPRETEiJ_P0022252 | Beclin 1, autophagy related. | Death effector domain-containing. | 0.581 |
Cnot1 | Cnot7 | MGP_SPRETEiJ_P0089189 | MGP_SPRETEiJ_P0087711 | CCR4-NOT transcription complex, subunit 1. | CCR4-NOT transcription complex, subunit 7. | 0.999 |
Cnot1 | Dedd | MGP_SPRETEiJ_P0089189 | MGP_SPRETEiJ_P0022252 | CCR4-NOT transcription complex, subunit 1. | Death effector domain-containing. | 0.613 |
Cnot1 | Noct | MGP_SPRETEiJ_P0089189 | MGP_SPRETEiJ_P0059830 | CCR4-NOT transcription complex, subunit 1. | Nocturnin. | 0.969 |
Cnot1 | Parn | MGP_SPRETEiJ_P0089189 | MGP_SPRETEiJ_P0042277 | CCR4-NOT transcription complex, subunit 1. | poly(A)-specific ribonuclease (deadenylation nuclease). | 0.694 |
Cnot7 | Cnot1 | MGP_SPRETEiJ_P0087711 | MGP_SPRETEiJ_P0089189 | CCR4-NOT transcription complex, subunit 7. | CCR4-NOT transcription complex, subunit 1. | 0.999 |
Cnot7 | Dedd | MGP_SPRETEiJ_P0087711 | MGP_SPRETEiJ_P0022252 | CCR4-NOT transcription complex, subunit 7. | Death effector domain-containing. | 0.613 |
Cnot7 | Noct | MGP_SPRETEiJ_P0087711 | MGP_SPRETEiJ_P0059830 | CCR4-NOT transcription complex, subunit 7. | Nocturnin. | 0.932 |
Cnot7 | Parn | MGP_SPRETEiJ_P0087711 | MGP_SPRETEiJ_P0042277 | CCR4-NOT transcription complex, subunit 7. | poly(A)-specific ribonuclease (deadenylation nuclease). | 0.656 |
Dedd | Becn1 | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0031456 | Death effector domain-containing. | Beclin 1, autophagy related. | 0.581 |
Dedd | Cnot1 | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0089189 | Death effector domain-containing. | CCR4-NOT transcription complex, subunit 1. | 0.613 |
Dedd | Cnot7 | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0087711 | Death effector domain-containing. | CCR4-NOT transcription complex, subunit 7. | 0.613 |
Dedd | E2f3 | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0035600 | Death effector domain-containing. | E2F transcription factor 3. | 0.613 |
Dedd | Irak2 | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0078540 | Death effector domain-containing. | Interleukin-1 receptor-associated kinase 2. | 0.573 |
Dedd | Isg20l2 | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0060654 | Death effector domain-containing. | Interferon stimulated exonuclease gene 20-like 2. | 0.495 |
Dedd | MGP_SPRETEiJ_P0052489 | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0052489 | Death effector domain-containing. | annotation not available | 0.495 |
Dedd | Noct | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0059830 | Death effector domain-containing. | Nocturnin. | 0.613 |
Dedd | Parn | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0042277 | Death effector domain-containing. | poly(A)-specific ribonuclease (deadenylation nuclease). | 0.613 |
Dedd | Pdcd6ip | MGP_SPRETEiJ_P0022252 | MGP_SPRETEiJ_P0094166 | Death effector domain-containing. | Programmed cell death 6 interacting protein. | 0.613 |
E2f3 | Dedd | MGP_SPRETEiJ_P0035600 | MGP_SPRETEiJ_P0022252 | E2F transcription factor 3. | Death effector domain-containing. | 0.613 |
page 1 of 2