STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col6a1Collagen, type VI, alpha 1. (1025 aa)    
Predicted Functional Partners:
Col6a2
Collagen, type VI, alpha 2.
  
0.999
Col1a1
Collagen, type I, alpha 1.
  
0.974
Col6a3
Collagen, type VI, alpha 3.
   
0.953
Cd44
CD44 antigen.
     
 0.940
Itga5
Integrin alpha 5 (fibronectin receptor alpha).
    
 0.939
Col1a2
Collagen, type I, alpha 2.
  
0.921
Col3a1
Collagen, type III, alpha 1.
  
0.915
Itga8
Integrin alpha 8.
    
 0.913
Gp6
Glycoprotein 6 (platelet).
     
 0.913
MGP_SPRETEiJ_P0037210
annotation not available
   
 
 0.910
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.