STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nup107Nucleoporin 107. (926 aa)    
Predicted Functional Partners:
Nup43
Nucleoporin 43.
   
 0.999
Ranbp2
RAN binding protein 2.
   
 0.999
Nup37
Nucleoporin 37.
   
 0.999
Nup85
Nucleoporin 85.
   
 0.999
Seh1l
SEH1-like (S. cerevisiae.
   
 0.999
Nup160
Nucleoporin 160.
   
 0.999
Sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.999
MGP_SPRETEiJ_P0084463
annotation not available
   
 0.999
Nup133
Nucleoporin 133.
   
 0.999
Ahctf1
AT hook containing transcription factor 1.
    
 0.998
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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