STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SarnpSAP domain containing ribonucleoprotein. (210 aa)    
Predicted Functional Partners:
Ddx39b
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B.
   
 0.999
Chtop
Chromatin target of PRMT1.
   
 0.992
Ddx39
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39.
   
 0.991
Alyref
Aly/REF export factor.
   
 0.988
Poldip3
Polymerase (DNA-directed), delta interacting protein 3.
   
 0.985
Thoc1
THO complex 1.
    
 0.981
MGP_SPRETEiJ_P0020941
annotation not available
    
 0.979
Alyref2
Aly/REF export factor 2.
   
 0.974
Thoc7
THO complex 7.
   
 0.973
Thoc2
THO complex 2.
   
 0.965
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.