STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chd3Chromodomain helicase DNA binding protein 3. (2054 aa)    
Predicted Functional Partners:
Hdac2
Histone deacetylase 2.
    
 0.999
MGP_SPRETEiJ_P0067103
annotation not available
   
 0.999
Hdac1
Histone deacetylase 1.
    
 0.999
Rbbp7
Retinoblastoma binding protein 7, chromatin remodeling factor.
   
 0.999
Chd4
Chromodomain helicase DNA binding protein 4.
  
0.998
Gatad2a
GATA zinc finger domain containing 2A.
   
 0.998
Mta2
Metastasis-associated gene family, member 2.
   
 0.993
Gatad2b
GATA zinc finger domain containing 2B.
   
 0.990
Mta1
Metastasis associated 1.
   
 0.983
Mta3
Metastasis associated 3.
   
 0.979
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.