STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsr1TSR1 20S rRNA accumulation. (803 aa)    
Predicted Functional Partners:
Ltv1
LTV1 ribosome biogenesis factor.
   
 0.999
Dimt1
DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).
   
 0.999
Bysl
Bystin-like.
   
 0.999
Rrp12
Ribosomal RNA processing 12 homolog (S. cerevisiae).
   
 0.999
Nob1
NIN1/RPN12 binding protein 1 homolog.
   
 0.999
Nat10
N-acetyltransferase 10.
   
 0.997
Nop14
NOP14 nucleolar protein.
   
 0.994
Rps9
Ribosomal protein S9.
   
  0.994
Rps3
Ribosomal protein S3.
    
 0.992
Heatr1
HEAT repeat containing 1.
   
 0.991
Your Current Organism:
Mus spretus
NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.